4BDW	Hydrolase	date	Oct 08, 2012
title	The Structure Of The Fni-Egf Tandem Domain Of Coagulation Fa In Complex With Holmium
authors	D.X.Beringer, L.M.J.Kroon-Batenburg
compound		source
Molecule: Coagulation Factor Xiia Heavy Chain Chain: A Fragment: Fni-Egf, Residues 133-215 Synonym: Coagulation Factor Xii, Hageman Factor, Haf Ec: 3.4.21.38 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Komagataella Pastoris Expression_system_taxid: 4922 Expression_system_strain: X-33 Expression_system_vector_type: Plasmid Expression_system_plasmid: Ppiczalpha
symmetry	Space Group: I 41 2 2	R_factor 0.219 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.245 96.245 47.331 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	CL, HO	enzyme	Hydrolase E.C.3.4.21.38 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	The structure of the FnI-EGF-like tandem domain of coagulation factor XII solved using SIRAS., Beringer DX, Kroon-Batenburg LM, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Feb 1;69(Pt 2):94-102., doi: 10.1107/S1744309113000286. Epub 2013 Jan 26. PMID:23385745

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk] Biological Unit Coordinates (4bdw.pdb1.gz) 29 Kb LPC: Ligand-Protein Contacts for 4BDW CSU: Contacts of Structural Units for 4BDW Structure Factors (131 Kb) Retrieve 4BDW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4BDW from S2C, [Save to disk] Re-refined 4bdw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4BDW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4BDW

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4BDW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4bdw_A] [4bdw] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4BDW: [EGF] [FN1 ] by SMART

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