4BGQ Transferase date Mar 28, 2013
title Crystal Structure Of The Human Cdkl5 Kinase Domain
authors P.Canning, T.Krojer, S.Goubin, P.Mahajan, M.Vollmar, A.C.W.Pike, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, A.Bullock
compound source
Molecule: Cyclin-Dependent Kinase-Like 5
Chain: A
Fragment: Kinase Domain, Residues 1-303
Synonym: Serinethreonine-Protein Kinase 9
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfb-Lic-Bse
Other_details: Site-Directed Mutagenesis
symmetry Space Group: P 21 21 21
R_factor 0.17382 R_Free 0.20135
length a length b length c angle alpha angle beta angle gamma
51.942 65.507 102.899 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 38R, ACT, EDO, NA enzyme Transferase E.C. BRENDA

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (4bgq.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 4BGQ
  • CSU: Contacts of Structural Units for 4BGQ
  • Structure Factors (808 Kb)
  • Retrieve 4BGQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BGQ from S2C, [Save to disk]
  • Re-refined 4bgq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BGQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BGQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BGQ, from MSDmotif at EBI
  • Fold representative 4bgq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bgq] [4bgq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BGQ: [S_TKc ] by SMART
  • Other resources with information on 4BGQ
  • Community annotation for 4BGQ at PDBWiki (http://pdbwiki.org)

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