4BOC Transcription date May 18, 2013
title Structure Of Mitochondrial Rna Polymerase Elongation Complex
authors K.Schwinghammer, A.Cheung, Y.Morozov, K.Agaronyan, D.Temiakov, P.
compound source
Molecule: Dna-Directed Rna Polymerase, Mitochondrial
Chain: A
Fragment: Residues 151-1230
Synonym: Mtrpol, Mitochondrial Rna Polymerase
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproexhtb

Molecule: 5'-D(Cpgptpcptpgpgpcpgptpgpcpgpcp Gpcpcpgpcptpapcpcpcpcpaptpg)-3';
Chain: T
Synonym: Dna Template Strand

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 5'-D(Cpaptpgpgpgpgptpapaptptpaptp Tptpcpgpapcpgpcpcpapgpapcpg)-3';
Chain: N
Synonym: Dna Non-Template Strand

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 5'-R(Apgpupcpupgpcpgpgpcpgpcpgpcp)-
Chain: R
Synonym: Rna Product Strand

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: I 2 3
R_factor 0.1793 R_Free 0.2090
length a length b length c angle alpha angle beta angle gamma
225.190 225.190 225.190 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.65 Å
enzyme Transferase E.C. BRENDA

Primary referenceStructure of human mitochondrial RNA polymerase elongation complex., Schwinghammer K, Cheung AC, Morozov YI, Agaronyan K, Temiakov D, Cramer P, Nat Struct Mol Biol. 2013 Oct 6. doi: 10.1038/nsmb.2683. PMID:24096365
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (403 Kb) [Save to disk]
  • Biological Unit Coordinates (4boc.pdb1.gz) 787 Kb
  • CSU: Contacts of Structural Units for 4BOC
  • Structure Factors (2082 Kb)
  • Retrieve 4BOC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BOC from S2C, [Save to disk]
  • Re-refined 4boc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BOC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BOC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BOC, from MSDmotif at EBI
  • Fold representative 4boc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4boc_T] [4boc] [4boc_N] [4boc_A] [4boc_R]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BOC: [RPOL_N ] by SMART
  • Other resources with information on 4BOC
  • Community annotation for 4BOC at PDBWiki (http://pdbwiki.org)

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