4BOC Transcription date May 18, 2013
title Structure Of Mitochondrial Rna Polymerase Elongation Complex
authors K.Schwinghammer, A.Cheung, Y.Morozov, K.Agaronyan, D.Temiakov, P.
compound source
Molecule: Dna-Directed Rna Polymerase, Mitochondrial
Chain: A
Fragment: Residues 151-1230
Synonym: Mtrpol, Mitochondrial Rna Polymerase
Ec: 2.7.7.6
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproexhtb

Molecule: 5'-D(Cpgptpcptpgpgpcpgptpgpcpgpcp Gpcpcpgpcptpapcpcpcpcpaptpg)-3';
Chain: T
Synonym: Dna Template Strand

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 5'-D(Cpaptpgpgpgpgptpapaptptpaptp Tptpcpgpapcpgpcpcpapgpapcpg)-3';
Chain: N
Synonym: Dna Non-Template Strand

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 5'-R(Apgpupcpupgpcpgpgpcpgpcpgpcp)-
Chain: R
Synonym: Rna Product Strand

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: I 2 3
R_factor 0.1793 R_Free 0.2090
crystal
cell
length a length b length c angle alpha angle beta angle gamma
225.190 225.190 225.190 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand
enzyme Transferase E.C.2.7.7.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of human mitochondrial RNA polymerase elongation complex., Schwinghammer K, Cheung AC, Morozov YI, Agaronyan K, Temiakov D, Cramer P, Nat Struct Mol Biol. 2013 Oct 6. doi: 10.1038/nsmb.2683. PMID:24096365
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (403 Kb) [Save to disk]
  • Biological Unit Coordinates (4boc.pdb1.gz) 787 Kb
  • CSU: Contacts of Structural Units for 4BOC
  • Structure Factors (2082 Kb)
  • Retrieve 4BOC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BOC from S2C, [Save to disk]
  • Re-refined 4boc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BOC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BOC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BOC, from MSDmotif at EBI
  • Fold representative 4boc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4boc_T] [4boc] [4boc_N] [4boc_A] [4boc_R]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BOC: [RPOL_N ] by SMART
  • Other resources with information on 4BOC
  • Community annotation for 4BOC at PDBWiki (http://pdbwiki.org)

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