4BY9 The structure of the Box CD enzyme reveals regulation of rRNA methylation date
authors Lapinaite, A., Simon, B., Skjaerven, L., Rakwalska-Bange, M., Gabel, F., Carlomagno, T.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
F, C, I, L


J, M, D, G
  • ribonuclease P activity


    • N, K, E, H


    Primary referenceThe structure of the box C/D enzyme reveals regulation of RNA methylation., Lapinaite A, Simon B, Skjaerven L, Rakwalska-Bange M, Gabel F, Carlomagno T, Nature. 2013 Oct 13. doi: 10.1038/nature12581. PMID:24121435
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (864 Kb) [Save to disk]
  • Biological Unit Coordinates (4by9.pdb1.gz) 859 Kb
  • CSU: Contacts of Structural Units for 4BY9
  • Original NMR restraints for 4BY9 from PDB
  • Retrieve 4BY9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BY9 from S2C, [Save to disk]
    • View 4BY9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4BY9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BY9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4by9_W] [4by9_Z] [4by9_F] [4by9_N] [4by9_J] [4by9_B] [4by9_L] [4by9_M] [4by9_H] [4by9_I] [4by9_K] [4by9_E] [4by9_A] [4by9_X] [4by9] [4by9_Y] [4by9_G] [4by9_C] [4by9_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4BY9: [Fibrillarin] [NOSIC ] by SMART
    • Other resources with information on 4BY9
  • Community annotation for 4BY9 at PDBWiki (http://pdbwiki.org)

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