4C0D Gene Regulation date Aug 01, 2013
title Structure Of The Not Module Of The Human Ccr4-Not Complex (Cnot1-Cnot2-Cnot3)
authors T.Raisch, S.Jonas, A.Boland, Y.Chen, E.Izaurralde, O.Weichenriede
compound source
Molecule: Ccr4-Not Transcription Complex Subunit 1
Chain: A
Fragment: Not1 Superfamily Homology Domain, Residues 1565-2
Synonym: Ccr4-Associated Factor 1, Negative Regulator Of Transcription Subunit 1 Homolog, Not1h, Hnot1, Cnot1;
Engineered: Yes
Other_details: Sample Was Proteolysed Prior To Crystallizat Most Of The Missing Residues (Remark 465) Are Probably Not Crystal;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petmcn (Pnyc)

Molecule: Ccr4-Not Transcription Complex Subunit 2
Chain: B
Fragment: Not Anchor Region And Not-Box Domain, Residues 34
Synonym: Ccr4-Associated Factor 2, Cnot2
Engineered: Yes
Other_details: Sample Was Proteolysed Prior To Crystallizat Most Of The Missing Residues (Remark 465) Are Probably Not Crystal;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petmcn (Pnea)

Molecule: Ccr4-Not Transcription Complex Subunit 3
Chain: C
Fragment: Not Anchor Region And Not-Box Domain, Residues 60
Synonym: Ccr4-Associated Factor 3, Leukocyte Receptor Clust Member 2, Cnot3;
Engineered: Yes
Other_details: Sample Was Proteolysed Prior To Crystallizat Most Of The Missing Residues (Remark 465) Are Probably Not Crystal

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petmcn (Pnea)
symmetry Space Group: P 21 21 2
R_factor 0.2239 R_Free 0.2726
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.570 165.920 78.830 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A


C, B


Primary referenceStructure and assembly of the NOT module of the human CCR4-NOT complex., Boland A, Chen Y, Raisch T, Jonas S, Kuzuoglu-Ozturk D, Wohlbold L, Weichenrieder O, Izaurralde E, Nat Struct Mol Biol. 2013 Oct 13. doi: 10.1038/nsmb.2681. PMID:24121232
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk]
  • Biological Unit Coordinates (4c0d.pdb1.gz) 140 Kb
  • CSU: Contacts of Structural Units for 4C0D
  • Structure Factors (182 Kb)
  • Retrieve 4C0D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4C0D from S2C, [Save to disk]
  • Re-refined 4c0d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4C0D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4C0D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4C0D, from MSDmotif at EBI
  • Fold representative 4c0d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4c0d] [4c0d_A] [4c0d_B] [4c0d_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4C0D
  • Community annotation for 4C0D at PDBWiki (http://pdbwiki.org)

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