4CDG Crystal structure of the Bloom's syndrome helicase BLM in complex with Nanobody date
authors Newman, J.A., Savitsky, P., Allerston, C.K., Pike, A.C.W., Pardon, E., Steyaert, J., Arrowsmith, C.H., Delft, F.von., Bountra, C., Edwards, A., Gileadi, O.
compound source
symmetry
R_factor
R_Free 0.2455
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.79
ligand ADP, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of the Bloom's syndrome helicase indicates a role for the HRDC domain in conformational changes., Newman JA, Savitsky P, Allerston CK, Bizard AH, Ozer O, Sarlos K, Liu Y, Pardon E, Steyaert J, Hickson ID, Gileadi O, Nucleic Acids Res. 2015 Apr 21. pii: gkv373. PMID:25901030
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk]
  • Biological Unit Coordinates (4cdg.pdb1.gz) 121 Kb
  • Biological Unit Coordinates (4cdg.pdb2.gz) 120 Kb
  • LPC: Ligand-Protein Contacts for 4CDG
  • CSU: Contacts of Structural Units for 4CDG
  • Structure Factors (2373 Kb)
  • Retrieve 4CDG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CDG from S2C, [Save to disk]
  • Re-refined 4cdg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4CDG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4CDG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CDG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cdg_D] [4cdg_C] [4cdg_A] [4cdg] [4cdg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4CDG: [DEXDc] [HELICc] [HRDC] [IGv] [RQC ] by SMART
    • Other resources with information on 4CDG
  • Community annotation for 4CDG at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science