4CVH Transferase date Mar 27, 2014
title Crystal Structure Of Human Isoprenoid Synthase Domain-Contai Protein
authors J.Kopec, D.S.Froese, T.Krojer, J.Newman, W.Kiyani, S.Goubin, C.Str Damerell, M.Vollmar, F.Von Delft, N.Burgess-Brown, C.Arrowsmith A.Edwards, C.Bountra, D.J.Lefeber, W.W.Yue
compound source
Molecule: Isoprenoid Synthase Domain-Containing Protein
Chain: A
Fragment: Residues 43-451
Synonym: Ispd, 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase-Like Protein;
Ec: 2.7.7.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfb-Lic-Bse
symmetry Space Group: C 2 2 21
R_factor 0.189 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.360 116.800 111.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.39 Å
ligand CL, EDO, MG enzyme Transferase E.C.2.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHuman ISPD Is a Cytidyltransferase Required for Dystroglycan O-Mannosylation., Riemersma M, Froese DS, van Tol W, Engelke UF, Kopec J, van Scherpenzeel M, Ashikov A, Krojer T, von Delft F, Tessari M, Buczkowska A, Swiezewska E, Jae LT, Brummelkamp TR, Manya H, Endo T, van Bokhoven H, Yue WW, Lefeber DJ, Chem Biol. 2015 Dec 17;22(12):1643-52. doi: 10.1016/j.chembiol.2015.10.014. Epub , 2015 Dec 10. PMID:26687144
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (4cvh.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 4CVH
  • CSU: Contacts of Structural Units for 4CVH
  • Structure Factors (379 Kb)
  • Retrieve 4CVH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CVH from S2C, [Save to disk]
  • Re-refined 4cvh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CVH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CVH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4CVH, from MSDmotif at EBI
  • Fold representative 4cvh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cvh] [4cvh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4CVH
  • Community annotation for 4CVH at PDBWiki (http://pdbwiki.org)

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