4D05 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand AMP, MG, MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • DNA ligase (ATP) activity


    • Primary referenceEnzyme-adenylate structure of a bacterial ATP-dependent DNA ligase with a minimized DNA-binding surface., Williamson A, Rothweiler U, Schroder Leiros HK, Acta Crystallogr D Biol Crystallogr. 2014 Nov;70(Pt 11):3043-56. doi:, 10.1107/S1399004714021099. Epub 2014 Oct 29. PMID:25372693
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (273 Kb) [Save to disk]
  • Biological Unit Coordinates (4d05.pdb1.gz) 137 Kb
  • Biological Unit Coordinates (4d05.pdb2.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 4D05
  • CSU: Contacts of Structural Units for 4D05
  • Structure Factors (1398 Kb)
  • Retrieve 4D05 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4D05 from S2C, [Save to disk]
  • Re-refined 4d05 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4D05 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d05] [4d05_A] [4d05_B]
  • SWISS-PROT database:

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