4D0L Phosphatidylinositol 4-kinase III beta-PIK93 in a complex with Rab11a- GTP gammaS date
authors Burke, J.E., Inglis, A.J., Perisic, O., Masson, G.R., McLaughin, S.H., Rutaganira, F., Shokat, K.M., Williams, R.L.
compound source
symmetry
R_factor
R_Free 0.25940
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.94
ligand 093, GSP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, E


F, D, B


Primary referenceStructures of PI4KIIIbeta complexes show simultaneous recruitment of Rab11 and its effectors., Burke JE, Inglis AJ, Perisic O, Masson GR, McLaughlin SH, Rutaganira F, Shokat KM, Williams RL, Science. 2014 May 30;344(6187):1035-8. doi: 10.1126/science.1253397. PMID:24876499
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (328 Kb) [Save to disk]
  • Biological Unit Coordinates (4d0l.pdb1.gz) 109 Kb
  • Biological Unit Coordinates (4d0l.pdb2.gz) 110 Kb
  • Biological Unit Coordinates (4d0l.pdb3.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 4D0L
  • CSU: Contacts of Structural Units for 4D0L
  • Structure Factors (1318 Kb)
  • Retrieve 4D0L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4D0L from S2C, [Save to disk]
  • Re-refined 4d0l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4D0L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4D0L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4D0L, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d0l_D] [4d0l_E] [4d0l] [4d0l_C] [4d0l_B] [4d0l_F] [4d0l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4D0L: [PI3Kc] [RAB ] by SMART
    • Other resources with information on 4D0L
  • Community annotation for 4D0L at PDBWiki (http://pdbwiki.org)

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