4D82 Metallosphera sedula Vps4 crystal structure date
authors Caillat, C., Macheboeuf, P., Wu, Y., McCarthy, A.A., Boeri-Erba, E., Effantin, G., Gottlinger, H.G., Weissenhorn, W., Renesto, P.
compound source
symmetry
R_factor
R_Free 0.26846
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.20
ligand ADP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceAsymmetric ring structure of Vps4 required for ESCRT-III disassembly., Caillat C, Macheboeuf P, Wu Y, McCarthy AA, Boeri-Erba E, Effantin G, Gottlinger HG, Weissenhorn W, Renesto P, Nat Commun. 2015 Dec 3;6:8781. doi: 10.1038/ncomms9781. PMID:26632262
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (277 Kb) [Save to disk]
  • Biological Unit Coordinates (4d82.pdb1.gz) 90 Kb
  • Biological Unit Coordinates (4d82.pdb2.gz) 92 Kb
  • Biological Unit Coordinates (4d82.pdb3.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 4D82
  • CSU: Contacts of Structural Units for 4D82
  • Structure Factors (1165 Kb)
  • Retrieve 4D82 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4D82 from S2C, [Save to disk]
  • Re-refined 4d82 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4D82 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4D82
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d82_C] [4d82_B] [4d82] [4d82_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4D82: [AAA ] by SMART
    • Other resources with information on 4D82
  • Community annotation for 4D82 at PDBWiki (http://pdbwiki.org)

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