4DB4 Mss116p DEAD-box helicase domain 2 bound to a chimaeric RNA-DNA duplex date 2012-01-13
authors Mallam, A.L., Campo, M.Del., Gilman, B.D., Sidote, D.J., Lambowitz, A.
compound source
symmetry
R_factor
R_Free 0.2801
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.60
Primary referenceStructural basis for RNA-duplex recognition and unwinding by the DEAD-box helicase Mss116p., Mallam AL, Del Campo M, Gilman B, Sidote DJ, Lambowitz AM, Nature. 2012 Sep 2. doi: 10.1038/nature11402. PMID:22940866
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (4db4.pdb1.gz) 97 Kb
  • Biological Unit Coordinates (4db4.pdb2.gz) 96 Kb
  • CSU: Contacts of Structural Units for 4DB4
  • Structure Factors (121 Kb)
  • Retrieve 4DB4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DB4 from S2C, [Save to disk]
  • Re-refined 4db4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DB4 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DB4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DB4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4db4_F] [4db4_C] [4db4_A] [4db4_B] [4db4_D] [4db4_E] [4db4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DB4: [HELICc ] by SMART
    • Other resources with information on 4DB4
  • Community annotation for 4DB4 at PDBWiki (http://pdbwiki.org)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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