4DHZ The structure of h/ceOTUB1-ubiquitin aldehyde-UBC13~Ub date
authors Wiener, R., Zhang, X., Wang, T., Wolberger, C.
compound source
symmetry
R_factor
R_Free 0.28768
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.11
ligand GLZ enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


F


Primary referenceThe mechanism of OTUB1-mediated inhibition of ubiquitination., Wiener R, Zhang X, Wang T, Wolberger C, Nature. 2012 Feb 22. doi: 10.1038/nature10911. PMID:22367539
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (4dhz.pdb1.gz) 77 Kb
  • Biological Unit Coordinates (4dhz.pdb2.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 4DHZ
  • CSU: Contacts of Structural Units for 4DHZ
  • Structure Factors (239 Kb)
  • Retrieve 4DHZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DHZ from S2C, [Save to disk]
  • Re-refined 4dhz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DHZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DHZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DHZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dhz_A] [4dhz_B] [4dhz_E] [4dhz] [4dhz_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4DHZ: [UBCc] [UBQ ] by SMART
  • Other resources with information on 4DHZ
  • Community annotation for 4DHZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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