4DJZ	Catalytic fragment of masp-1 in complex with its specific inhibitor developed by directed evolution on sgci scaffold	date	2012-02-03
authors	Heja, D., Harmat, V., Fodor, K., Wilmanns, M., Dobo, J., Kekesi, K.A., Zavodszky, P., Gal, P., Pal, G.
compound		source
symmetry		R_factor R_Free 0.27414
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.20
Gene Ontology	Chain Function Process Component D, B H, I
Primary reference	Monospecific inhibitors show that both mannan-binding lectin-associated serine protease (MASP)-1 and -2 are essential for lectin pathway activation and reveal structural plasticity of MASP-2., Heja D, Harmat V, Fodor K, Wilmanns M, Dobo J, Kekesi KA, Zavodszky P, Gal P, Pal G, J Biol Chem. 2012 Apr 16. PMID:22511776

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (274 Kb) [Save to disk] Biological Unit Coordinates (4djz.pdb1.gz) 135 Kb Biological Unit Coordinates (4djz.pdb2.gz) 134 Kb CSU: Contacts of Structural Units for 4DJZ Structure Factors (262 Kb) Retrieve 4DJZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4DJZ from S2C, [Save to disk] Re-refined 4djz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4DJZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4DJZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4DJZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4djz_B] [4djz_A] [4djz] [4djz_C] [4djz_H] [4djz_D] [4djz_I] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4DJZ: [CCP] [Tryp_SPc ] by SMART

Other resources with information on 4DJZ

Community annotation for 4DJZ at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---