4DLE Transferase Dna date Feb 06, 2012
title Ternary Structure Of The Large Fragment Of Taq Dna Polymeras Fluoroproline Variant
authors B.Holzberger, S.Obeid, W.Welte, K.Diederichs, A.Marx
compound source
Molecule: Dna Polymerase I, Thermostable
Chain: A
Fragment: Unp Residues 293-832
Synonym: Taq Polymerase 1
Ec: 2.7.7.7
Engineered: Yes
Organism_scientific: Thermus Aquaticus
Organism_taxid: 271
Gene: Pola, Pol1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna Primer
Chain: B
Engineered: Yes

Synthetic: Yes

Molecule: Dna Template
Chain: C
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 31 2 1
R_factor 0.233 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.619 109.619 91.011 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.44 Å
ligand DCT, DOC, EDO, FP9, GOL, MG, MN enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (217 Kb) [Save to disk]
  • Biological Unit Coordinates (4dle.pdb1.gz) 208 Kb
  • LPC: Ligand-Protein Contacts for 4DLE
  • CSU: Contacts of Structural Units for 4DLE
  • Structure Factors (400 Kb)
  • Retrieve 4DLE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DLE from S2C, [Save to disk]
  • Re-refined 4dle structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DLE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DLE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4DLE, from MSDmotif at EBI
  • Fold representative 4dle from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dle] [4dle_B] [4dle_C] [4dle_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DLE: [POLAc ] by SMART
  • Other resources with information on 4DLE
  • Community annotation for 4DLE at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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