4DMA Crystal structure of ERa LBD in complex with RU100132 date
authors Osz, J., Brelivet, Y., Peluso-Iltis, C., Cura, V., Eiler, S., Ruff, M., Bourguet, W., Rochel, N., Moras, D.
compound source
symmetry
R_factor
R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand 0L8 enzyme
Primary referenceStructural basis for a molecular allosteric control mechanism of cofactor binding to nuclear receptors., Osz J, Brelivet Y, Peluso-Iltis C, Cura V, Eiler S, Ruff M, Bourguet W, Rochel N, Moras D, Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):E588-94. Epub 2012 Feb 21. PMID:22355136
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (4dma.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 4DMA
  • CSU: Contacts of Structural Units for 4DMA
  • Structure Factors (177 Kb)
  • Retrieve 4DMA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DMA from S2C, [Save to disk]
  • Re-refined 4dma structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DMA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DMA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DMA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dma_A] [4dma_E] [4dma_F] [4dma] [4dma_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DMA: [HOLI ] by SMART
  • Other resources with information on 4DMA
  • Community annotation for 4DMA at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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