4DMZ PelD 156-455 from Pseudomonas aeruginosa PA14, apo form date 2012-02-08
authors Whitney, J.C., Colvin, K.M., Marmont, L.S., Robinson, H., Parsek, M.R., Howell, P.L.
compound source
symmetry
R_factor
R_Free 0.2378
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand EDO, MG, TRS enzyme
Gene PA14
Primary referenceStructure of the cytoplasmic region of PelD, a degenerate diguanylate cyclase receptor that regulates exopolysaccharide production in Pseudomonas aeruginosa., Whitney JC, Colvin KM, Marmont LS, Robinson H, Parsek MR, Howell PL, J Biol Chem. 2012 May 17. PMID:22605337
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]
  • Biological Unit Coordinates (4dmz.pdb1.gz) 355 Kb
  • LPC: Ligand-Protein Contacts for 4DMZ
  • CSU: Contacts of Structural Units for 4DMZ
  • Structure Factors (270 Kb)
  • Retrieve 4DMZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DMZ from S2C, [Save to disk]
  • Re-refined 4dmz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DMZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DMZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DMZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dmz_A] [4dmz_B] [4dmz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DMZ: [GAF ] by SMART
    • Other resources with information on 4DMZ
  • Community annotation for 4DMZ at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science