4DO4 Pharmacological chaperones for human alpha-N-acetylgalactosaminidase date
authors Clark, N.E., Garman, S.C.
compound source
symmetry
R_factor
R_Free 0.1776
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.40
ligand ACY, BMA, CIT, DJN, FUC, GOL, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePharmacological chaperones for human alpha-N-acetylgalactosaminidase., Clark NE, Metcalf MC, Best D, Fleet GW, Garman SC, Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17400-5. doi:, 10.1073/pnas.1203924109. Epub 2012 Oct 8. PMID:23045655
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (320 Kb) [Save to disk]
  • Biological Unit Coordinates (4do4.pdb1.gz) 311 Kb
  • LPC: Ligand-Protein Contacts for 4DO4
  • CSU: Contacts of Structural Units for 4DO4
  • Structure Factors (3104 Kb)
  • Retrieve 4DO4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DO4 from S2C, [Save to disk]
  • Re-refined 4do4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DO4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DO4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DO4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4do4_B] [4do4] [4do4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4DO4
  • Community annotation for 4DO4 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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