4DZL A de novo designed Coiled Coil CC-Tri date
authors Bruning, M., Thomson, A.R., Zaccai, N.R., Brady, R.L., Woolfson, D.N.
compound source
symmetry
R_factor
R_Free 0.28759
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand ACE, PHI enzyme
Primary referenceA basis set of de novo coiled-coil Peptide oligomers for rational protein design and synthetic biology., Fletcher JM, Boyle AL, Bruning M, Bartlett GJ, Vincent TL, Zaccai NR, Armstrong CT, Bromley EH, Booth PJ, Brady RL, Thomson AR, Woolfson DN, ACS Synth Biol. 2012 Jun 15;1(6):240-50. doi: 10.1021/sb300028q. Epub 2012 May, 14. PMID:23651206
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (4dzl.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (4dzl.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (4dzl.pdb3.gz) 30 Kb
  • Biological Unit Coordinates (4dzl.pdb4.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 4DZL
  • CSU: Contacts of Structural Units for 4DZL
  • Structure Factors (764 Kb)
  • Retrieve 4DZL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DZL from S2C, [Save to disk]
  • Re-refined 4dzl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DZL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DZL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DZL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dzl] [4dzl_D] [4dzl_H] [4dzl_I] [4dzl_G] [4dzl_L] [4dzl_C] [4dzl_F] [4dzl_K] [4dzl_B] [4dzl_E] [4dzl_J] [4dzl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4DZL
  • Community annotation for 4DZL at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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