4EDJ Crystal structure of the GRASP55 GRASP Domain with a phosphomimetic mutation (S189D) date 2012-03-27
authors Truschel, S.T., Zhang, M., Bachert, C., Macbeth, M.R., Linstedt, A.D.
compound source
symmetry
R_factor
R_Free 0.27052
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand K enzyme
Primary referenceAllosteric regulation of GRASP-dependent Golgi membrane tethering by mitotic phosphorylation., Truschel ST, Zhang M, Bachert C, Macbeth MR, Linstedt AD, J Biol Chem. 2012 Apr 20. PMID:22523075
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (4edj.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (4edj.pdb2.gz) 35 Kb
  • Biological Unit Coordinates (4edj.pdb3.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 4EDJ
  • CSU: Contacts of Structural Units for 4EDJ
  • Structure Factors (503 Kb)
  • Retrieve 4EDJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EDJ from S2C, [Save to disk]
  • Re-refined 4edj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EDJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EDJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EDJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4edj] [4edj_A] [4edj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4EDJ: [PDZ ] by SMART
  • Other resources with information on 4EDJ
  • Community annotation for 4EDJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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