4EF4 Crystal structure of STING CTD complex with c-di-GMP date 2012-03-29
authors Ouyang, S., Ru, H., Shaw, N., Jiang, Y., Niu, F., Zhu, Y., Qiu, W., Li, Y., Liu, Z.J.
compound source
symmetry
R_factor
R_Free 0.2570
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
ligand C2E, CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Analysis of the STING Adaptor Protein Reveals a Hydrophobic Dimer Interface and Mode of Cyclic di-GMP Binding., Ouyang S, Song X, Wang Y, Ru H, Shaw N, Jiang Y, Niu F, Zhu Y, Qiu W, Parvatiyar K, Li Y, Zhang R, Cheng G, Liu ZJ, Immunity. 2012 May 9. PMID:22579474
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (4ef4.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 4EF4
  • CSU: Contacts of Structural Units for 4EF4
  • Structure Factors (385 Kb)
  • Retrieve 4EF4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EF4 from S2C, [Save to disk]
  • Re-refined 4ef4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4EF4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4EF4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EF4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ef4_A] [4ef4_B] [4ef4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4EF4
  • Community annotation for 4EF4 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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