4ESJ RESTRICTION ENDONUCLEASE DpnI IN COMPLEX WITH TARGET DNA date 2012-04-23
authors Siwek, W., Czapinska, H., Bochtler, M., Bujnicki, J.M., Skowronek, K.
compound source
symmetry
R_factor
R_Free 0.21754
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.05
ligand 6MA, AZI, GOL, UNX, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nuclease activity
  • endonuclease activity


    • Primary referenceCrystal structure and mechanism of action of the N6-methyladenine-dependent type IIM restriction endonuclease R.DpnI., Siwek W, Czapinska H, Bochtler M, Bujnicki J, Skowronek K, Nucleic Acids Res. 2012 May 18. PMID:22610857
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (218 Kb) [Save to disk]
  • Biological Unit Coordinates (4esj.pdb1.gz) 109 Kb
  • Biological Unit Coordinates (4esj.pdb2.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 4ESJ
  • CSU: Contacts of Structural Units for 4ESJ
  • Structure Factors (457 Kb)
  • Retrieve 4ESJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ESJ from S2C, [Save to disk]
  • Re-refined 4esj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ESJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ESJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ESJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4esj_D] [4esj_F] [4esj_B] [4esj] [4esj_E] [4esj_A] [4esj_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4ESJ
  • Community annotation for 4ESJ at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science