4EYR Crystal structure of multidrug-resistant clinical isolate 769 HIV-1 protease in complex with ritonavir date
authors Liu, Z., Yedidi, R.S., Wang, Y., Brunzelle, J.S., Kovari, I.A., Kovari, L.C.
compound source
symmetry
R_factor
R_Free 0.22580
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand RIT BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInsights into the mechanism of drug resistance: X-ray structure analysis of multi-drug resistant HIV-1 protease ritonavir complex., Liu Z, Yedidi RS, Wang Y, Dewdney TG, Reiter SJ, Brunzelle JS, Kovari IA, Kovari LC, Biochem Biophys Res Commun. 2013 Jan 8. pii: S0006-291X(13)00021-1. doi:, 10.1016/j.bbrc.2012.12.127. PMID:23313846
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (4eyr.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 4EYR
  • CSU: Contacts of Structural Units for 4EYR
  • Structure Factors (265 Kb)
  • Retrieve 4EYR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EYR from S2C, [Save to disk]
  • Re-refined 4eyr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4EYR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4EYR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EYR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4eyr] [4eyr_A] [4eyr_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4EYR
  • Community annotation for 4EYR at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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