4F12 Crystal structure of the extracellular domain of human GABA(B) receptor GBR2 date
authors Geng, Y., Xiong, D., Mosyak, L., Malito, D.L., Kniazeff, J., Chen, Y., Burmakina, S., Quick, M., Bush, M., Javitch, J.A., Pin, J.P., Fan, Q.R.
compound source
symmetry
R_factor
R_Free 0.2537
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.02
ligand FUC, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and functional interaction of the extracellular domain of human GABA(B) receptor GBR2., Geng Y, Xiong D, Mosyak L, Malito DL, Kniazeff J, Chen Y, Burmakina S, Quick M, Bush M, Javitch JA, Pin JP, Fan QR, Nat Neurosci. 2012 Jun 3;15(7):970-8. doi: 10.1038/nn.3133. PMID:22660477
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (4f12.pdb1.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 4F12
  • CSU: Contacts of Structural Units for 4F12
  • Structure Factors (133 Kb)
  • Retrieve 4F12 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F12 from S2C, [Save to disk]
  • Re-refined 4f12 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4F12 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4F12
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F12, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f12] [4f12_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4F12
  • Community annotation for 4F12 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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