4FYQ Human aminopeptidase N (CD13) date
authors Wong, A.H., Rini, J.M.
compound source
symmetry
R_factor
R_Free 0.19339
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand ACY, BMA, NAG, SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • virus receptor activity


  • Primary referenceThe X-ray Crystal Structure of Human Aminopeptidase N Reveals a Novel Dimer and the Basis for Peptide Processing., Wong AH, Zhou D, Rini JM, J Biol Chem. 2012 Oct 26;287(44):36804-13. doi: 10.1074/jbc.M112.398842. Epub, 2012 Aug 29. PMID:22932899
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (4fyq.pdb1.gz) 318 Kb
  • LPC: Ligand-Protein Contacts for 4FYQ
  • CSU: Contacts of Structural Units for 4FYQ
  • Structure Factors (1818 Kb)
  • Retrieve 4FYQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FYQ from S2C, [Save to disk]
  • Re-refined 4fyq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FYQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FYQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FYQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fyq_A] [4fyq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4FYQ
  • Community annotation for 4FYQ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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