4G6V CdiA-CT/CdiI toxin and immunity complex from Burkholderia pseudomallei date 2012-07-19
authors Morse, R.P., Nikolakakis, K., Willet, J., Gerrick, E., Low, D.A., Hayes, C.S., Goulding, C.W.
compound source
symmetry
R_factor
R_Free 0.2452
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.64
ligand BR enzyme
Gene BP1026A
Gene
Ontology
ChainFunctionProcessComponent
A, C, G, E


Primary referenceStructural basis of toxicity and immunity in contact-dependent growth inhibition (CDI) systems., Morse RP, Nikolakakis KC, Willett JL, Gerrick E, Low DA, Hayes CS, Goulding CW, Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21480-5. doi:, 10.1073/pnas.1216238110. Epub 2012 Dec 10. PMID:23236156
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (4g6v.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (4g6v.pdb2.gz) 37 Kb
  • Biological Unit Coordinates (4g6v.pdb3.gz) 37 Kb
  • Biological Unit Coordinates (4g6v.pdb4.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 4G6V
  • CSU: Contacts of Structural Units for 4G6V
  • Structure Factors (387 Kb)
  • Retrieve 4G6V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G6V from S2C, [Save to disk]
  • Re-refined 4g6v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4G6V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4G6V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G6V, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g6v_H] [4g6v_B] [4g6v_D] [4g6v_F] [4g6v_C] [4g6v_A] [4g6v] [4g6v_E] [4g6v_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4G6V
  • Community annotation for 4G6V at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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