4G8F Crystal Structure of clone42 TCR date
authors Gras, S., Bhati, M., Rossjohn, J.
compound source
symmetry
R_factor
R_Free 0.2356
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
Primary referenceA conserved human T cell population targets mycobacterial antigens presented by CD1b., Van Rhijn I, Kasmar A, de Jong A, Gras S, Bhati M, Doorenspleet ME, de Vries N, Godfrey DI, Altman JD, de Jager W, Rossjohn J, Moody DB, Nat Immunol. 2013 Jun 2;14(7):706-13. doi: 10.1038/ni.2630. Epub 2013 Jun 2. PMID:23727893
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (4g8f.pdb1.gz) 74 Kb
  • CSU: Contacts of Structural Units for 4G8F
  • Structure Factors (358 Kb)
  • Retrieve 4G8F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G8F from S2C, [Save to disk]
  • Re-refined 4g8f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4G8F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4G8F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G8F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g8f] [4g8f_A] [4g8f_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4G8F: [IG_like] [IGc1] [IGv ] by SMART
    • Other resources with information on 4G8F
  • Community annotation for 4G8F at PDBWiki (http://pdbwiki.org)

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