OCA Atlas for 4G9I

4G9I

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MSE, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, E, C, A, F, D

Primary reference

Structure of the [NiFe]-hydrogenase maturation protein HypF from Thermococcus kodakarensis KOD1., Tominaga T, Watanabe S, Matsumi R, Atomi H, Imanaka T, Miki K, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Oct 1;68(Pt 10):1153-7., doi: 10.1107/S1744309112036421. Epub 2012 Sep 22. PMID:23027738

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (737 Kb) [Save to disk]

Biological Unit Coordinates (4g9i.pdb1.gz) 130 Kb

Biological Unit Coordinates (4g9i.pdb2.gz) 130 Kb

Biological Unit Coordinates (4g9i.pdb3.gz) 128 Kb

Biological Unit Coordinates (4g9i.pdb4.gz) 129 Kb

Biological Unit Coordinates (4g9i.pdb5.gz) 129 Kb

Biological Unit Coordinates (4g9i.pdb6.gz) 129 Kb

LPC: Ligand-Protein Contacts for 4G9I

CSU: Contacts of Structural Units for 4G9I

Structure Factors (5047 Kb)

Retrieve 4G9I in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4G9I from S2C, [Save to disk]

Re-refined 4g9i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4G9I in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4g9i] [4g9i_A] [4g9i_B] [4g9i_C] [4g9i_D] [4g9i_E] [4g9i_F]

SWISS-PROT database:

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