4GAT Transcription Dna date Nov 07, 1997
title Solution Nmr Structure Of The Wild Type Dna Binding Domain Of Area Complexed To A 13bp Dna Containing A Cgata Site, Regularized Mean Structure
authors G.M.Clore, M.Starich, M.Wikstrom, A.M.Gronenborn
compound source
Molecule: Dna (5'- D(Cpapgpcpgpaptpapgpapgpapc)-3');
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: Dna (5'- D(Gptpcptpcptpaptpcpgpcptpg)-3');
Chain: C
Engineered: Yes

Synthetic: Yes

Molecule: Nitrogen Regulatory Protein Area
Chain: A
Fragment: Dna Binding Domain
Engineered: Yes

Organism_scientific: Emericella Nidulans
Organism_taxid: 162425
Organ: Tail
Gene: Potential
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
ligand ZN enzyme
related structures by homologous chain: 3GAT, 5GAT
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe solution structure of a fungal AREA protein-DNA complex: an alternative binding mode for the basic carboxyl tail of GATA factors., Starich MR, Wikstrom M, Arst HN Jr, Clore GM, Gronenborn AM, J Mol Biol 1998 Apr 3;277(3):605-20. PMID:9533883
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 4GAT
  • CSU: Contacts of Structural Units for 4GAT
  • Original NMR restraints for 4GAT from PDB
  • Retrieve 4GAT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GAT from S2C, [Save to disk]
  • View 4GAT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GAT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4GAT, from MSDmotif at EBI
  • Genome occurence of 4GAT's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d4gata_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 4gat from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gat_C] [4gat] [4gat_B] [4gat_A]
  • SWISS-PROT database: [P17429]
  • Domain organization of [AREA_EMENI] by SWISSPFAM
  • Domain found in 4GAT: [ZnF_GATA ] by SMART
  • Other resources with information on 4GAT
  • Community annotation for 4GAT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 4GAT from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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