5GAT	SOLUTION NMR STRUCTURE OF THE WILD TYPE DNA BINDING DOMAIN OF AREA COMPLEXED TO A 13BP DNA CONTAINING A CGATA SITE, 35 STRUCTURES	date
authors	Clore, G.M., Starich, M., Wikstrom, M., Gronenborn, A.M.
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction, 35 Models	resolution
ligand	ZN	enzyme
related structures	by homologous chain: 4GAT, 6GAT
Gene Ontology	Chain Function Process Component A
Primary reference	The solution structure of a fungal AREA protein-DNA complex: an alternative binding mode for the basic carboxyl tail of GATA factors., Starich MR, Wikstrom M, Arst HN Jr, Clore GM, Gronenborn AM, J Mol Biol 1998 Apr 3;277(3):605-20. PMID:9533883

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1104 Kb) [Save to disk] Biological Unit Coordinates (5gat.pdb1.gz) 31 Kb LPC: Ligand-Protein Contacts for 5GAT CSU: Contacts of Structural Units for 5GAT Retrieve 5GAT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GAT from S2C, [Save to disk]

View 5GAT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5GAT

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 5GAT, from MSDmotif at EBI Genome occurence of 5GAT's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d5gata_, region A [Jmol] [rasmolscript] [script source] Fold representative 5gat from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5gat_B] [5gat] [5gat_A] [5gat_C] SWISS-PROT database: [P17429] Domain organization of [AREA_EMENI] by SWISSPFAM Domain found in 5GAT: [ZnF_GATA ] by SMART

Other resources with information on 5GAT

Community annotation for 5GAT at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

Movements, Movies and Images

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