6GAT Transcription Dna date Nov 07, 1997
title Solution Nmr Structure Of The L22v Mutant Dna Binding Domain Of Area Complexed To A 13 Bp Dna Containing A Tgata Site, Regularized Mean Structure
authors G.M.Clore, M.Starich, M.Wikstrom, A.M.Gronenborn
compound source
Molecule: Dna (5'- D(Cpapgptpgpaptpapgpapgpapc)-3');
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: Dna (5'- D(Gptpcptpcptpaptpcpapcptpg)-3');
Chain: C
Engineered: Yes

Synthetic: Yes

Molecule: Nitrogen Regulatory Protein Area
Chain: A
Fragment: Dna Binding Domain
Engineered: Yes
Mutation: Yes

Organism_scientific: Emericella Nidulans
Organism_taxid: 162425
Gene: Potential
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
ligand ZN enzyme
related structures by homologous chain: 5GAT, 7GAT
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe solution structure of the Leu22-->Val mutant AREA DNA binding domain complexed with a TGATAG core element defines a role for hydrophobic packing in the determination of specificity., Starich MR, Wikstrom M, Schumacher S, Arst HN Jr, Gronenborn AM, Clore GM, J Mol Biol 1998 Apr 3;277(3):621-34. PMID:9533884
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 6GAT
  • CSU: Contacts of Structural Units for 6GAT
  • Original NMR restraints for 6GAT from PDB
  • Retrieve 6GAT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GAT from S2C, [Save to disk]
  • View 6GAT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GAT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 6GAT, from MSDmotif at EBI
  • Genome occurence of 6GAT's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d6gata_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 6gat from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gat] [6gat_A] [6gat_C] [6gat_B]
  • SWISS-PROT database: [P17429]
  • Domain organization of [AREA_EMENI] by SWISSPFAM
  • Domain found in 6GAT: [ZnF_GATA ] by SMART
  • Other resources with information on 6GAT
  • Community annotation for 6GAT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 6GAT from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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