4GDK		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	NA	enzyme
Gene Ontology	Chain Function Process Component A, D E, B
Primary reference	Structure of the human ATG12~ATG5 conjugate required for LC3 lipidation in autophagy., Otomo C, Metlagel Z, Takaesu G, Otomo T, Nat Struct Mol Biol. 2012 Dec 2. doi: 10.1038/nsmb.2431. PMID:23202584

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (277 Kb) [Save to disk] Biological Unit Coordinates (4gdk.pdb1.gz) 268 Kb LPC: Ligand-Protein Contacts for 4GDK CSU: Contacts of Structural Units for 4GDK Structure Factors (167 Kb) Retrieve 4GDK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4GDK from S2C, [Save to disk] Re-refined 4gdk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4GDK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4gdk] [4gdk_A] [4gdk_B] [4gdk_C] [4gdk_D] [4gdk_E] [4gdk_F] SWISS-PROT database:

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