4GG2 The crystal structure of glutamate-bound human gamma-glutamyltranspeptidase 1 date 2012-08-04
authors West, M.B., Chen, Y., Wickham, S., Heroux, A., Cahill, K., Hanigan, M.H., Mooers, B.H.M.
compound source
symmetry
R_factor
R_Free 0.1833
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.21
ligand CL, GLU, IOD, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceNovel insights into eukaryotic gamma-glutamyl transpeptidase 1 from the crystal structure of the glutamate-bound human enzyme., West MB, Chen Y, Wickham S, Heroux A, Cahill K, Hanigan MH, Mooers BH, J Biol Chem. 2013 Sep 18. PMID:24047895
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (4gg2.pdb1.gz) 166 Kb
  • LPC: Ligand-Protein Contacts for 4GG2
  • CSU: Contacts of Structural Units for 4GG2
  • Structure Factors (1180 Kb)
  • Retrieve 4GG2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GG2 from S2C, [Save to disk]
  • Re-refined 4gg2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GG2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GG2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GG2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d4gg2, region G:2-189,G:353-431 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gg2_B] [4gg2] [4gg2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4GG2
  • Community annotation for 4GG2 at PDBWiki (http://pdbwiki.org)

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