4GK9	Crystal structure of Burkholderia oklahomensis agglutinin (BOA) bound to 3a,6a-mannopentaose	date
authors	Whitley, M.J., Furey, W., Gronenborn, A.M.
compound		source
symmetry		R_factor R_Free 0.1931
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.90
ligand	BMA, IMD, MAN, NA	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Burkholderia oklahomensis agglutinin is a canonical two-domain OAA-family lectin: structures, carbohydrate binding and anti-HIV activity., Whitley MJ, Furey W, Kollipara S, Gronenborn AM, FEBS J. 2013 May;280(9):2056-67. doi: 10.1111/febs.12229. Epub 2013 Apr 2. PMID:23480609

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk] Biological Unit Coordinates (4gk9.pdb1.gz) 55 Kb LPC: Ligand-Protein Contacts for 4GK9 CSU: Contacts of Structural Units for 4GK9 Structure Factors (229 Kb) Retrieve 4GK9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4GK9 from S2C, [Save to disk] Re-refined 4gk9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4GK9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4GK9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4GK9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4gk9] [4gk9_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4GK9

Community annotation for 4GK9 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---