4GLU Crystal structure of the mirror image form of VEGF-A date
authors Mandal, K., Uppalapati, M., Ault-Riche, D., Kenney, J., Lowitz, J., Sidhu, S., Kent, S.B.H.
compound source
symmetry
R_factor
R_Free 0.2092
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand ACT, DAR, DAS, DCY, DGL, DGN, DHI, DIL, DLE, DLY, DPN, DPR, DSG, DSN, DTH, DTY, DVA, GOL, MED, TFA enzyme
Primary referenceChemical synthesis and X-ray structure of a heterochiral {D-protein antagonist plus vascular endothelial growth factor} protein complex by racemic crystallography., Mandal K, Uppalapati M, Ault-Riche D, Kenney J, Lowitz J, Sidhu SS, Kent SB, Proc Natl Acad Sci U S A. 2012 Sep 11;109(37):14779-84. doi:, 10.1073/pnas.1210483109. Epub 2012 Aug 27. PMID:22927390
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk]
  • Biological Unit Coordinates (4glu.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (4glu.pdb2.gz) 75 Kb
  • Biological Unit Coordinates (4glu.pdb3.gz) 74 Kb
  • Biological Unit Coordinates (4glu.pdb4.gz) 208 Kb
  • LPC: Ligand-Protein Contacts for 4GLU
  • CSU: Contacts of Structural Units for 4GLU
  • Structure Factors (732 Kb)
  • Retrieve 4GLU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GLU from S2C, [Save to disk]
  • Re-refined 4glu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GLU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GLU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GLU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4glu_E] [4glu_C] [4glu_D] [4glu] [4glu_B] [4glu_F] [4glu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GLU: [PDGF ] by SMART
  • Other resources with information on 4GLU
  • Community annotation for 4GLU at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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