OCA Atlas for 4GMJ

4GMJ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CL, GOL, MG

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, E, A
D, B, F	3'-5'-exoribonuclease activi... nuclease activity exonuclease activity exoribonuclease activity poly(A)-specific ribonucleas...

Primary reference

The structural basis for the interaction between the CAF1 nuclease and the NOT1 scaffold of the human CCR4-NOT deadenylase complex., Petit AP, Wohlbold L, Bawankar P, Huntzinger E, Schmidt S, Izaurralde E, Weichenrieder O, Nucleic Acids Res. 2012 Nov;40(21):11058-72. doi: 10.1093/nar/gks883. Epub 2012, Sep 12. PMID:22977175

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (463 Kb) [Save to disk]

Biological Unit Coordinates (4gmj.pdb1.gz) 157 Kb

Biological Unit Coordinates (4gmj.pdb2.gz) 153 Kb

Biological Unit Coordinates (4gmj.pdb3.gz) 155 Kb

LPC: Ligand-Protein Contacts for 4GMJ

CSU: Contacts of Structural Units for 4GMJ

Structure Factors (425 Kb)

Retrieve 4GMJ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4GMJ from S2C, [Save to disk]

Re-refined 4gmj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4GMJ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4gmj] [4gmj_A] [4gmj_B] [4gmj_C] [4gmj_D] [4gmj_E] [4gmj_F]

SWISS-PROT database:

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