4GMJ Structure of human NOT1 MIF4G domain co-crystallized with CAF1 date 2012-08-16
authors Petit, P., Weichenrieder, O., Wohlbold, L., Izaurralde, E.
compound source
symmetry
R_factor
R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand CL, GOL, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, E


F, D, B
  • 3'-5'-exoribonuclease activi...
  • nuclease activity
  • exonuclease activity
  • exoribonuclease activity
  • poly(A)-specific ribonucleas...


    • Primary referenceThe structural basis for the interaction between the CAF1 nuclease and the NOT1 scaffold of the human CCR4-NOT deadenylase complex., Petit AP, Wohlbold L, Bawankar P, Huntzinger E, Schmidt S, Izaurralde E, Weichenrieder O, Nucleic Acids Res. 2012 Nov;40(21):11058-72. doi: 10.1093/nar/gks883. Epub 2012, Sep 12. PMID:22977175
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (463 Kb) [Save to disk]
  • Biological Unit Coordinates (4gmj.pdb1.gz) 157 Kb
  • Biological Unit Coordinates (4gmj.pdb2.gz) 153 Kb
  • Biological Unit Coordinates (4gmj.pdb3.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 4GMJ
  • CSU: Contacts of Structural Units for 4GMJ
  • Structure Factors (425 Kb)
  • Retrieve 4GMJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GMJ from S2C, [Save to disk]
  • Re-refined 4gmj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GMJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GMJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GMJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gmj_C] [4gmj_E] [4gmj_A] [4gmj_F] [4gmj_D] [4gmj] [4gmj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4GMJ
  • Community annotation for 4GMJ at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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