4GYP Crystal structure of the heterotetrameric complex of GlucD and GlucDRP from E. coli K-12 MG1655 (EFI TARGET EFI-506058) date 2012-09-05
authors Lukk, T., Ghasempur, S., Imker, H.J., Gerlt, J.A., Nair, S.K., EFI, Enzyme.Function.Initiative.
compound source
symmetry
R_factor
R_Free 0.1863
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand CIT, GOL, MG, P6G, PEG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (570 Kb) [Save to disk]
  • Biological Unit Coordinates (4gyp.pdb1.gz) 558 Kb
  • LPC: Ligand-Protein Contacts for 4GYP
  • CSU: Contacts of Structural Units for 4GYP
  • Structure Factors (1054 Kb)
  • Retrieve 4GYP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GYP from S2C, [Save to disk]
  • Re-refined 4gyp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GYP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GYP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GYP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gyp_C] [4gyp_B] [4gyp_D] [4gyp] [4gyp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GYP: [MR_MLE ] by SMART
  • Other resources with information on 4GYP
  • Community annotation for 4GYP at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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