4HJJ Structure Reveals Function of the Dual Variable Domain Immunoglobulin (DVD-Ig) Molecule date 2012-10-12
authors Jakob, C.G., Edalji, R., Judge, R.A., DiGiammarino, E., Li, Y., Gu, J., Ghayur, T.
compound source
symmetry
R_factor
R_Free 0.2195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand CL, GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure reveals function of the dual variable domain immunoglobulin (DVD-Ig) molecule., Jakob CG, Edalji R, Judge RA, Digiammarino E, Li Y, Gu J, Ghayur T, MAbs. 2013 Apr 2;5(3). PMID:23549062
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]
  • Biological Unit Coordinates (4hjj.pdb1.gz) 149 Kb
  • LPC: Ligand-Protein Contacts for 4HJJ
  • CSU: Contacts of Structural Units for 4HJJ
  • Structure Factors (1349 Kb)
  • Retrieve 4HJJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HJJ from S2C, [Save to disk]
  • Re-refined 4hjj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HJJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HJJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HJJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hjj_L] [4hjj] [4hjj_H] [4hjj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4HJJ: [IG_like] [IGv] [IL1 ] by SMART
  • Other resources with information on 4HJJ
  • Community annotation for 4HJJ at PDBWiki (http://pdbwiki.org)

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