4I9V date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 5HC, MG, SPK enzyme
Primary referenceDifferential stabilities and sequence-dependent base pair opening dynamics of watson-crick base pairs with 5-hydroxymethylcytosine, 5-formylcytosine, or 5-carboxylcytosine., Szulik MW, Pallan PS, Nocek B, Voehler M, Banerjee S, Brooks S, Joachimiak A, Egli M, Eichman BF, Stone MP, Biochemistry. 2015 Feb 10;54(5):1294-305. doi: 10.1021/bi501534x. Epub 2015 Jan, 29. PMID:25632825
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (4i9v.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 4I9V
  • CSU: Contacts of Structural Units for 4I9V
  • Structure Factors (411 Kb)
  • Retrieve 4I9V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I9V from S2C, [Save to disk]
  • Re-refined 4i9v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4I9V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i9v] [4i9v_A] [4i9v_B]
  • SWISS-PROT database:

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