4IQY Crystal structure of the human protein-proximal ADP-ribosyl-hydrolase MacroD2 date 2013-01-14
authors Jankevicius, G., Hassler, M., Golia, B., Rybin, V., Zacharias, M., Timinszky, G., Ladurner, A.G.
compound source
symmetry
R_factor
R_Free 0.1870
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.55
ligand AR6, MG enzyme
Primary referenceA family of macrodomain proteins reverses cellular mono-ADP-ribosylation., Jankevicius G, Hassler M, Golia B, Rybin V, Zacharias M, Timinszky G, Ladurner AG, Nat Struct Mol Biol. 2013 Apr;20(4):508-14. doi: 10.1038/nsmb.2523. Epub 2013 Mar, 10. PMID:23474712
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (4iqy.pdb1.gz) 81 Kb
  • Biological Unit Coordinates (4iqy.pdb2.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 4IQY
  • CSU: Contacts of Structural Units for 4IQY
  • Structure Factors (605 Kb)
  • Retrieve 4IQY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IQY from S2C, [Save to disk]
  • Re-refined 4iqy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IQY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IQY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IQY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4iqy] [4iqy_A] [4iqy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4IQY: [A1pp ] by SMART
    • Other resources with information on 4IQY
  • Community annotation for 4IQY at PDBWiki (http://pdbwiki.org)

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