4J15 Crystal structure of human cytosolic aspartyl-tRNA synthetase, a component of multi-tRNA synthetase complex date 2013-02-01
authors Kim, K.R., Park, S.H., Kim, H.S., Kim, B.G., Kim, D.G., Rhee, K.H., Park, M.S., Kim, H.J., Kim, S., Han, B.W.
compound source
symmetry
R_factor
R_Free 0.22775
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.24
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of human cytosolic aspartyl-tRNA synthetase, a component of multi-tRNA synthetase complex., Kim KR, Park SH, Kim HS, Rhee KH, Kim BG, Kim DG, Park MS, Kim HJ, Kim S, Han BW, Proteins. 2013 Apr 23. doi: 10.1002/prot.24306. PMID:23609930
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (4j15.pdb1.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 4J15
  • CSU: Contacts of Structural Units for 4J15
  • Structure Factors (700 Kb)
  • Retrieve 4J15 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J15 from S2C, [Save to disk]
  • Re-refined 4j15 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4J15 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4J15
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J15, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j15] [4j15_A] [4j15_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4J15
  • Community annotation for 4J15 at PDBWiki (http://pdbwiki.org)

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