4J1Y The X-ray crystal structure of human complement protease C1s zymogen date 2013-02-03
authors Perry, A.J., Wijeyewickrema, L.C., Wilmann, P.G., Gunzburg, M.J., Andrea, L.D., Irving, J.A., Pang, S.S., Duncan, R.C., Wilce, J.A., Whisstock, J.C., Pike, R.N.
compound source
symmetry
R_factor
R_Free 0.2588
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.66
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA molecular switch governs the interaction between human complement protease C1s and its substrate, complement C4., Perry AJ, Wijeyewickrema LC, Wilmann PG, Gunzburg MJ, D'Andrea L, Irving JA, Pang SS, Duncan RC, Wilce JA, Whisstock JC, Pike RN, J Biol Chem. 2013 Apr 16. PMID:23592783
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk]
  • Biological Unit Coordinates (4j1y.pdb1.gz) 123 Kb
  • Biological Unit Coordinates (4j1y.pdb2.gz) 118 Kb
  • Biological Unit Coordinates (4j1y.pdb3.gz) 238 Kb
  • CSU: Contacts of Structural Units for 4J1Y
  • Structure Factors (427 Kb)
  • Retrieve 4J1Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J1Y from S2C, [Save to disk]
  • Re-refined 4j1y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4J1Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4J1Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J1Y, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j1y_B] [4j1y_A] [4j1y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4J1Y: [CCP] [Tryp_SPc ] by SMART
    • Other resources with information on 4J1Y
  • Community annotation for 4J1Y at PDBWiki (http://pdbwiki.org)

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