4J2J Crystal structure of AXH domain complex with Capicua date 2013-02-04
authors Song, J.J., Kim, E.
compound source
symmetry
R_factor
R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructural basis of protein complex formation and reconfiguration by polyglutamine disease protein Ataxin-1 and Capicua., Kim E, Lu HC, Zoghbi HY, Song JJ, Genes Dev. 2013 Mar 15;27(6):590-5. doi: 10.1101/gad.212068.112. PMID:23512657
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (4j2j.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (4j2j.pdb2.gz) 21 Kb
  • Biological Unit Coordinates (4j2j.pdb3.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 4J2J
  • CSU: Contacts of Structural Units for 4J2J
  • Structure Factors (323 Kb)
  • Retrieve 4J2J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J2J from S2C, [Save to disk]
  • Re-refined 4j2j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4J2J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4J2J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J2J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j2j_F] [4j2j_D] [4j2j_E] [4j2j_C] [4j2j] [4j2j_B] [4j2j_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4J2J: [AXH ] by SMART
  • Other resources with information on 4J2J
  • Community annotation for 4J2J at PDBWiki (http://pdbwiki.org)

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