4J4J Crystal structure of the APOBEC3F Vif binding domain date 2013-02-06
authors Siu, K.K., Sultana, A., Lee, J.E.
compound source
symmetry
R_factor
R_Free 0.2769
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural determinants of HIV-1 Vif susceptibility and DNA binding in APOBEC3F., Siu KK, Sultana A, Azimi FC, Lee JE, Nat Commun. 2013 Nov 4;4:2593. doi: 10.1038/ncomms3593. PMID:24185281
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]
  • Biological Unit Coordinates (4j4j.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (4j4j.pdb2.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 4J4J
  • CSU: Contacts of Structural Units for 4J4J
  • Structure Factors (797 Kb)
  • Retrieve 4J4J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J4J from S2C, [Save to disk]
  • Re-refined 4j4j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4J4J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4J4J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J4J, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j4j_A] [4j4j] [4j4j_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4J4J
  • Community annotation for 4J4J at PDBWiki (http://pdbwiki.org)

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