4J8F Chaperone date Feb 14, 2013
title Crystal Structure Of A Fusion Protein Containing The Nbd Of The Middle Domain Of Hip
authors Z.Li, A.Bracher
compound source
Molecule: Heat Shock 70 Kda Protein 1a1b, Hsc70-Interactin
Chain: A
Fragment: P08107 Residues 1-382, P50503 Residues 77-247
Engineered: Yes
Other_details: Hsp70(1-382)-Hip(77-247) Fusion Protein
Organism_scientific: Homo Sapiens, Rattus Norvegicus
Organism_common: Human, Brown Rat,Rat,Rats
Organism_taxid: 9606, 10116
Gene: Hspa1, Hspa1a, Hspa1b, St13, Fam10a1, Hip, Hspa1a, St
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Cod+ Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproex-Htb
symmetry Space Group: P 41
R_factor 0.194 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.596 65.596 141.470 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand ADP, IOD, MG, PO4 enzyme
Primary referenceStructure and function of Hip, an attenuator of the Hsp70 chaperone cycle., Li Z, Hartl FU, Bracher A, Nat Struct Mol Biol. 2013 Aug;20(8):929-35. doi: 10.1038/nsmb.2608. Epub 2013 Jun, 30. PMID:23812373
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk]
  • Biological Unit Coordinates (4j8f.pdb1.gz) 365 Kb
  • Biological Unit Coordinates (4j8f.pdb2.gz) 183 Kb
  • LPC: Ligand-Protein Contacts for 4J8F
  • CSU: Contacts of Structural Units for 4J8F
  • Structure Factors (247 Kb)
  • Retrieve 4J8F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J8F from S2C, [Save to disk]
  • Re-refined 4j8f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4J8F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4J8F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4J8F, from MSDmotif at EBI
  • Fold representative 4j8f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j8f] [4j8f_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4J8F: [TPR ] by SMART
  • Other resources with information on 4J8F
  • Community annotation for 4J8F at PDBWiki (http://pdbwiki.org)

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