4JDL Crystal structure of native abscisic acid receptor PYL5 at 2.65 Angstrom date 2013-02-25
authors Zhang, X., Zhang, Q., Chen, Z.
compound source
symmetry
R_factor
R_Free 0.27444
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.65
ligand GOL enzyme
note 4JDL supersedes 3QRZ
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • protein phosphatase inhibito...


  • Primary referenceStructural Insights into the Abscisic Acid Stereospecificity by the ABA Receptors PYR/PYL/RCAR., Zhang X, Jiang L, Wang G, Yu L, Zhang Q, Xin Q, Wu W, Gong Z, Chen Z, PLoS One. 2013 Jul 2;8(7):e67477. doi: 10.1371/journal.pone.0067477. Print 2013. PMID:23844015
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (4jdl.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (4jdl.pdb2.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 4JDL
  • CSU: Contacts of Structural Units for 4JDL
  • Structure Factors (323 Kb)
  • Retrieve 4JDL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JDL from S2C, [Save to disk]
  • Re-refined 4jdl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JDL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JDL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JDL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jdl_C] [4jdl_B] [4jdl_A] [4jdl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4JDL
  • Community annotation for 4JDL at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science