OCA Atlas for 4JKR

4JKR

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

G4P, SR, ZN

enzyme

Gene

BWG ; ECDH10B ; ECDH1ME8569 ; ECDH1ME8569 ; ECDH1 ; ECDH1 ; O3K ; O3O ; O3O ; O3O

Gene
Ontology

Chain	Function	Process	Component
D, J
E, K
F, L	bacterial sigma factor activ...
G, B, A, H
I, C

Primary reference

The Mechanism of E. coli RNA Polymerase Regulation by ppGpp Is Suggested by the Structure of their Complex., Zuo Y, Wang Y, Steitz TA, Mol Cell. 2013 May 9;50(3):430-6. doi: 10.1016/j.molcel.2013.03.020. Epub 2013, Apr 25. PMID:23623685

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2559 Kb) [Save to disk]

Biological Unit Coordinates (4jkr.pdb1.gz) 1278 Kb

Biological Unit Coordinates (4jkr.pdb2.gz) 1283 Kb

LPC: Ligand-Protein Contacts for 4JKR

CSU: Contacts of Structural Units for 4JKR

Structure Factors (1327 Kb)

Retrieve 4JKR in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4JKR from S2C, [Save to disk]

Re-refined 4jkr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4JKR in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4jkr] [4jkr_A] [4jkr_B] [4jkr_C] [4jkr_D] [4jkr_E] [4jkr_F] [4jkr_G] [4jkr_H] [4jkr_I] [4jkr_J] [4jkr_K] [4jkr_L]

SWISS-PROT database:

Domains found in 4JKR: [RNA_pol_Rpb6] [RPOLA_N] [RPOLD ] by SMART

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