4JKV Structure of the human smoothened 7TM receptor in complex with an antitumor agent date
authors Wang, C., Wu, H., Katritch, V., Han, G.W., Huang, X., Liu, W., Siu, F.Y., Roth, B.L., Cherezov, V., Stevens, R.C., GPCR, GPCR.Network.
compound source
symmetry
R_factor
R_Free 0.2314
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.45
ligand 1KS, OLA, OLC, PEG, PG4, PGE enzyme
Gene SMO (H. sapiens)
Gene
Ontology
ChainFunctionProcessComponent
A, B


Disease Basal cell carcinoma, somatic OMIM:601500
Primary referenceStructure of the human smoothened receptor bound to an antitumour agent., Wang C, Wu H, Katritch V, Han GW, Huang XP, Liu W, Siu FY, Roth BL, Cherezov V, Stevens RC, Nature. 2013 May 1. doi: 10.1038/nature12167. PMID:23636324
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (304 Kb) [Save to disk]
  • Biological Unit Coordinates (4jkv.pdb1.gz) 296 Kb
  • LPC: Ligand-Protein Contacts for 4JKV
  • CSU: Contacts of Structural Units for 4JKV
  • Structure Factors (836 Kb)
  • Retrieve 4JKV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JKV from S2C, [Save to disk]
  • Re-refined 4jkv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JKV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JKV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JKV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jkv_B] [4jkv] [4jkv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JKV: [Frizzled ] by SMART
    • Other resources with information on 4JKV
  • Community annotation for 4JKV at PDBWiki (http://pdbwiki.org)

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