4KJZ Crystal Structure of Thermus Thermophilus IF2, Apo and GDP-bound Forms (2-474) date 2013-05-04
authors Eiler, D.R., Lin, J., Steitz, T.A.
compound source
symmetry
R_factor
R_Free 0.27564
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand GDP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceInitiation factor 2 crystal structure reveals a different domain organization from eukaryotic initiation factor 5B and mechanism among translational GTPases., Eiler D, Lin J, Simonetti A, Klaholz BP, Steitz TA, Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15662-7. doi:, 10.1073/pnas.1309360110. Epub 2013 Sep 12. PMID:24029018
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk]
  • Biological Unit Coordinates (4kjz.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (4kjz.pdb2.gz) 71 Kb
  • Biological Unit Coordinates (4kjz.pdb3.gz) 71 Kb
  • Biological Unit Coordinates (4kjz.pdb4.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 4KJZ
  • CSU: Contacts of Structural Units for 4KJZ
  • Structure Factors (1393 Kb)
  • Retrieve 4KJZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KJZ from S2C, [Save to disk]
  • Re-refined 4kjz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4KJZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4KJZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KJZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kjz_C] [4kjz_A] [4kjz_D] [4kjz_B] [4kjz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4KJZ
  • Community annotation for 4KJZ at PDBWiki (http://pdbwiki.org)

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