4KXZ Immune System date May 28, 2013
title Crystal Structure Of Tgfb2 In Complex With Gc2008.
authors M.Mathieu, A.G.Moulin, R.Wei
compound source
Molecule: Transforming Growth Factor Beta-2
Chain: A, B, D, E
Fragment: Unp Residues 303-414
Synonym: Tgf-Beta-2, Bsc-1 Cell Growth Inhibitor, Cetermin, Glioblastoma-Derived T-Cell Suppressor Factor, G-Tsf, Polye Latency-Associated Peptide, Lap;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tgfb2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Gc1008 Heavy Chain
Chain: H, J, N, Q
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293

Molecule: Gc1008 Light Chain
Chain: I, L, M, P
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
symmetry Space Group: P 21 21 2
R_factor 0.183 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.200 359.680 64.630 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.83 Å
ligand MES, PE5 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, E, B


Primary referenceStructures of a pan-specific antagonist antibody complexed to different isoforms of TGFbeta reveal structural plasticity of antibody-antigen interactions., Moulin A, Mathieu M, Lawrence C, Bigelow R, Levine M, Hamel C, Marquette JP, Le Parc J, Loux C, Ferrari P, Capdevila C, Dumas J, Dumas B, Rak A, Bird J, Qiu H, Pan CQ, Edmunds T, Wei RR, Protein Sci. 2014 Sep 10. doi: 10.1002/pro.2548. PMID:25209176
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (352 Kb) [Save to disk]
  • Biological Unit Coordinates (4kxz.pdb1.gz) 176 Kb
  • Biological Unit Coordinates (4kxz.pdb2.gz) 177 Kb
  • LPC: Ligand-Protein Contacts for 4KXZ
  • CSU: Contacts of Structural Units for 4KXZ
  • Structure Factors (667 Kb)
  • Retrieve 4KXZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KXZ from S2C, [Save to disk]
  • Re-refined 4kxz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4KXZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4KXZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4KXZ, from MSDmotif at EBI
  • Fold representative 4kxz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kxz_L] [4kxz_B] [4kxz_D] [4kxz] [4kxz_M] [4kxz_P] [4kxz_E] [4kxz_I] [4kxz_N] [4kxz_A] [4kxz_Q] [4kxz_H] [4kxz_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4KXZ: [IG_like] [IGv] [TGFB ] by SMART
  • Other resources with information on 4KXZ
  • Community annotation for 4KXZ at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science