4KXZ	Immune System	date	May 28, 2013
title	Crystal Structure Of Tgfb2 In Complex With Gc2008.
authors	M.Mathieu, A.G.Moulin, R.Wei
compound		source
Molecule: Transforming Growth Factor Beta-2 Chain: A, B, D, E Fragment: Unp Residues 303-414 Synonym: Tgf-Beta-2, Bsc-1 Cell Growth Inhibitor, Cetermin, Glioblastoma-Derived T-Cell Suppressor Factor, G-Tsf, Polye Latency-Associated Peptide, Lap; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tgfb2 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Gc1008 Heavy Chain Chain: H, J, N, Q Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293
Molecule: Gc1008 Light Chain Chain: I, L, M, P Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293
symmetry	Space Group: P 21 21 2	R_factor 0.183 R_Free 0.222
crystal cell	length a length b length c angle alpha angle beta angle gamma 131.200 359.680 64.630 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.83 Å
ligand	MES, PE5	enzyme
Gene Ontology	Chain Function Process Component A, D, E, B
Primary reference	Structures of a pan-specific antagonist antibody complexed to different isoforms of TGFbeta reveal structural plasticity of antibody-antigen interactions., Moulin A, Mathieu M, Lawrence C, Bigelow R, Levine M, Hamel C, Marquette JP, Le Parc J, Loux C, Ferrari P, Capdevila C, Dumas J, Dumas B, Rak A, Bird J, Qiu H, Pan CQ, Edmunds T, Wei RR, Protein Sci. 2014 Sep 10. doi: 10.1002/pro.2548. PMID:25209176

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (352 Kb) [Save to disk] Biological Unit Coordinates (4kxz.pdb1.gz) 176 Kb Biological Unit Coordinates (4kxz.pdb2.gz) 177 Kb LPC: Ligand-Protein Contacts for 4KXZ CSU: Contacts of Structural Units for 4KXZ Structure Factors (667 Kb) Retrieve 4KXZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4KXZ from S2C, [Save to disk] Re-refined 4kxz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4KXZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4KXZ

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4KXZ, from MSDmotif at EBI Fold representative 4kxz from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4kxz_L] [4kxz_B] [4kxz_D] [4kxz] [4kxz_M] [4kxz_P] [4kxz_E] [4kxz_I] [4kxz_N] [4kxz_A] [4kxz_Q] [4kxz_H] [4kxz_J] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4KXZ: [IG_like] [IGv] [TGFB ] by SMART

Other resources with information on 4KXZ

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