OCA Atlas for 4L04

4L04

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

AKG, CA, NAP

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, A, F, B, C, E

Primary reference

Mutant IDH1 Enhances the Production of 2-Hydroxyglutarate Due to Its Kinetic Mechanism., Rendina AR, Pietrak B, Smallwood A, Zhao H, Qi H, Quinn C, Adams ND, Concha N, Duraiswami C, Thrall SH, Sweitzer S, Schwartz B, Biochemistry. 2013 Jul 2;52(26):4563-77. doi: 10.1021/bi400514k. Epub 2013 Jun, 21. PMID:23731180

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (829 Kb) [Save to disk]

Biological Unit Coordinates (4l04.pdb1.gz) 280 Kb

Biological Unit Coordinates (4l04.pdb2.gz) 274 Kb

Biological Unit Coordinates (4l04.pdb3.gz) 278 Kb

LPC: Ligand-Protein Contacts for 4L04

CSU: Contacts of Structural Units for 4L04

Structure Factors (1957 Kb)

Retrieve 4L04 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4L04 from S2C, [Save to disk]

Re-refined 4l04 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4L04 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4l04] [4l04_A] [4l04_B] [4l04_C] [4l04_D] [4l04_E] [4l04_F]

SWISS-PROT database:

Domain found in 4L04: [Iso_dh ] by SMART

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